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The Indian Scad, Decapterus russelli is an important pelagic carangid widely distributed throughout the Indian Ocean and the Indo-West Pacific. Despite being widely distributed in the Indian Ocean, the information regarding genetic structuring and diversity has been lacking compared to its Indo Malay Archipelago counterparts. The present study was conducted to investigate the genetic stock structure of D. russelli based on mitochondrial (Cyt b) and nuclear (DrAldoB1) markers along Indian waters. The results indicated the presence of a single panmictic stock across the Indian Ocean region. High haplotype diversity associated with low nucleotide diversity suggested a population bottleneck followed by rapid population growth. Phylogenetic analysis revealed the absence of geographical clustering of lineages with the most common haplotype distributed globally. The pelagic life style, migratory capabilities, and larval dispersal may be the contributing factors to the observed spatial homogeneity of D. russelli. However, significant genetic differentiation was observed between the populations from Indian Ocean and Indo-Malay Archipelago. Hierarchical molecular variance analysis (AMOVA), pairwise F ST comparisons and SAMOVA showed existence of two distinct genetic stocks of D. russelli in the Indian Ocean and IMA. The observed interpopulation genetic variation was high. A plausible explanation for the genetic differentiation observed between the Indo-Malay Archipelago and the Indian Ocean regions suggest the influence of historic isolation, ocean surface currents and biotic and abiotic features of the ocean. Also, there was a significant relationship between genetic distance and geographical distance between population pairs in a manner consistent with isolation-by-distance. These resulted in the evolution of a phylogeographic break for this species between these regions. The findings of these results suggest that D. russelli from the Indian Ocean shall be managed in its entire area of distribution as a single stock. Further, the Indian Ocean and Indo-Malayan stocks can be managed separately.

Titel:	Genetic analyses reveal panmixia in Indian waters and population subdivision across Indian Ocean and Indo-Malay Archipelago for Decapterus russelli.
Autor/in / Beteiligte Person:	Jose, A ; Sukumaran, S ; Roul, SK ; Azeez, PA ; Kizhakudan, SJ ; Raj, N ; Nisha, K ; Gopalakrishnan, A
Link:	Full Text Finder (Volltext)
Zeitschrift:	Scientific reports, Jg. 13 (2023-12-21), Heft 1, S. 22860
Veröffentlichung:	London : Nature Publishing Group, copyright 2011-, 2023
Medientyp:	academicJournal
ISSN:	2045-2322 (electronic)
DOI:	10.1038/s41598-023-49805-8
Schlagwort:	Indian Ocean Phylogeny Indonesia Phylogeography Pacific Ocean DNA, Mitochondrial genetics Genetics, Population Genetic Variation
Sonstiges:	Nachgewiesen in: MEDLINE Sprachen: English Publication Type: Journal Article Language: English [Sci Rep] 2023 Dec 21; Vol. 13 (1), pp. 22860. <i>Date of Electronic Publication: </i>2023 Dec 21. MeSH Terms: Genetics, Population* ; Genetic Variation* ; Indian Ocean ; Phylogeny ; Indonesia ; Phylogeography ; Pacific Ocean ; DNA, Mitochondrial / genetics References: Mol Biol Evol. 2017 Dec 1;34(12):3299-3302. (PMID: 29029172) ; Mol Ecol. 2002 Dec;11(12):2571-81. (PMID: 12453240) ; Mol Ecol. 2012 Feb;21(4):942-59. (PMID: 22211356) ; Mol Ecol. 2006 May;15(6):1419-39. (PMID: 16629801) ; Mol Biol Evol. 1992 May;9(3):552-69. (PMID: 1316531) ; Gene. 2016 Jan 15;576(1 Pt 2):372-8. (PMID: 26494160) ; Sci Rep. 2020 Jun 3;10(1):9081. (PMID: 32493917) ; Glob Chang Biol. 2022 Jan;28(1):4-5. (PMID: 34674350) ; Genetics. 1991 Oct;129(2):555-62. (PMID: 1743491) ; Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. (PMID: 29722887) ; Mol Phylogenet Evol. 2005 May;35(2):496-507. (PMID: 15804418) ; Mol Biol Evol. 1992 Jan;9(1):138-51. (PMID: 1552836) ; Mol Biol Evol. 1999 Jan;16(1):37-48. (PMID: 10331250) ; Genetics. 1997 Oct;147(2):915-25. (PMID: 9335623) ; Mol Biol Evol. 1998 Nov;15(11):1481-90. (PMID: 12572611) ; Heredity (Edinb). 2018 Jun;120(6):515-532. (PMID: 29326479) ; PLoS One. 2013 May 22;8(5):e63558. (PMID: 23717447) ; Nature. 2000 Jun 22;405(6789):907-13. (PMID: 10879524) ; Proc Natl Acad Sci U S A. 1973 Dec;70(12):3321-3. (PMID: 4519626) ; Mol Ecol. 2008 Jan;17(2):582-97. (PMID: 18179439) ; Science. 2003 Jan 17;299(5605):389-92. (PMID: 12532016) ; Hum Biol. 1994 Aug;66(4):591-600. (PMID: 8088750) ; Genetics. 1999 Jul;152(3):1079-89. (PMID: 10388826) ; Genetics. 1931 Mar;16(2):97-159. (PMID: 17246615) ; Evol Appl. 2021 Feb 10;14(5):1286-1300. (PMID: 34025768) ; Genetics. 1997 Apr;145(4):1219-28. (PMID: 9093870) ; Curr Opin Plant Biol. 2008 Apr;11(2):103-9. (PMID: 18353707) ; Conserv Biol. 2008 Aug;22(4):952-64. (PMID: 18544092) ; Nature. 2002 Sep 12;419(6903):199-206. (PMID: 12226674) ; Mol Ecol. 2009 Aug;18(15):3128-50. (PMID: 19627488) ; Am J Hum Genet. 2001 Apr;68(4):978-89. (PMID: 11254454) ; J Evol Biol. 2009 Dec;22(12):2363-75. (PMID: 19888939) ; Mitochondrial DNA A DNA Mapp Seq Anal. 2020 Oct;31(7):298-310. (PMID: 32744461) ; Evol Appl. 2012 Jan;5(1):39-52. (PMID: 25568028) ; Zookeys. 2020 Feb 12;911:139-160. (PMID: 32104142) ; Proc Biol Sci. 2003 Feb 7;270(1512):313-21. (PMID: 12614582) ; Science. 2000 May 12;288(5468):1033-5. (PMID: 10807570) ; C R Acad Sci III. 2000 Mar;323(3):315-25. (PMID: 10782336) ; Nature. 2003 Feb 27;421(6926):933-6. (PMID: 12606998) ; Mol Ecol Resour. 2010 May;10(3):564-7. (PMID: 21565059) ; Heredity (Edinb). 2011 Mar;106(3):500-10. (PMID: 21224876) ; ILAR J. 1995;37(4):159-173. (PMID: 11528035) ; FEBS J. 2012 Oct;279(20):3765-75. (PMID: 22934970) ; Mol Ecol. 2007 Dec;16(24):5183-92. (PMID: 18092992) ; Sci Rep. 2022 Apr 4;12(1):5642. (PMID: 35379869) ; Heredity (Edinb). 2011 Mar;106(3):404-20. (PMID: 21224881) ; Genetics. 1992 Jun;131(2):479-91. (PMID: 1644282) ; Trends Ecol Evol. 2001 Jan 1;16(1):37-45. (PMID: 11146143) ; Nature. 2000 Aug 24;406(6798):882-5. (PMID: 10972288) ; Cancer Res. 1967 Feb;27(2):209-20. (PMID: 6018555) ; BMC Evol Biol. 2005 Feb 22;5:19. (PMID: 15725349) ; Evol Appl. 2012 Feb;5(2):202-18. (PMID: 25568042) ; Evol Appl. 2009 Aug;2(3):371-93. (PMID: 25567887) ; Heredity (Edinb). 2005 Oct;95(4):315-26. (PMID: 16094299) ; Genetics. 1989 Nov;123(3):585-95. (PMID: 2513255) ; Biol Rev Camb Philos Soc. 2014 Nov;89(4):767-90. (PMID: 24495219) ; PLoS One. 2015 Mar 18;10(3):e0119749. (PMID: 25786216) ; Genetics. 1981 Jan;97(1):145-63. (PMID: 6266912) ; Evolution. 2002 Feb;56(2):378-99. (PMID: 11926506) ; Mitochondrial DNA. 2015 Apr;26(2):189-94. (PMID: 24491101) ; Mol Ecol. 2004 Mar;13(3):585-95. (PMID: 14871363) Grant Information: MBT/GNM/25 Indian Council of Agricultural Research Substance Nomenclature: 0 (DNA, Mitochondrial) Entry Date(s): Date Created: 20231221 Date Completed: 20231225 Latest Revision: 20231228 Update Code: 20231229 PubMed Central ID: PMC10739887

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Genetic analyses reveal panmixia in Indian waters and population subdivision across Indian Ocean and Indo-Malay Archipelago for Decapterus russelli.